BBa_J42022BBa_J42022 Version 1 (Component)PolyLinker for Nested Landing Pad
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_I720007BBa_I720007 Version 1 (Component)araBp->rpoN (leucine landing pad)
BBa_I720008BBa_I720008 Version 1 (Component)Ara landing pad (pBBLP 6)
BBa_I720009BBa_I720009 Version 1 (Component)Ara landing pad (pBBLP 7)
BBa_I720010BBa_I720010 Version 1 (Component)Ara landing pad (pBBLP 8)
BBa_K138000BBa_K138000 Version 1 (Component)NifHp in BioBrick Compatible Leucine Landing Pad
BBa_K138001BBa_K138001 Version 1 (Component)nifHp driving mutant NifL in Leucine Landing Pad
BBa_I766556BBa_I766556 Version 1 (Component)pAdh (Strong) Promoter
BBa_K122002BBa_K122002 Version 1 (Component)pADH1 (truncated)
BBa_K165015BBa_K165015 Version 1 (Component)pADH1 yeast constituative promoter
BBa_K341444BBa_K341444 Version 1 (Component)mCherry -> landing pad -> I-Scel site
BBa_K319032BBa_K319032 Version 1 (Component)pADH1+yeGFP+tADH1
BBa_K624063BBa_K624063 Version 1 (Component)nested_Inv F (inter-strain nested primer)
BBa_K624064BBa_K624064 Version 1 (Component)nested_Inv R (inter-strain nested primer)
BBa_K624065BBa_K624065 Version 1 (Component)nested_LLO F (inter-strain nested primer)
BBa_K624066BBa_K624066 Version 1 (Component)nested_LLO R (inter-strain nested primer)
padBO_32952 Version 1 (Component) PadCBO_26685 Version 1 (Component) padRBO_31090 Version 1 (Component) PadRBO_10873 Version 1 (Component) SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K1334017BBa_K1334017 Version 1 (Component)PADH from Pseudomonas putida
BBa_K801003BBa_K801003 Version 1 (Component)pTUM103 yeast shuttle vector with pADH1 promoter
BBa_K1690006BBa_K1690006 Version 1 (Component)pADH1_GFP (Yeast reporter)
STAR targeBBa_K1893009 Version 1 (Component)STAR inducible superfolder GFP (pAD1.S5+SF-GFP)
STAR targeBBa_K1893031 Version 1 (Component)STAR target (pAD1.S5)
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
BBa_K763005BBa_K763005 Version 1 (Component)pADH2 + Gene encoding YAP1 protein
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SEGASEGA_collection Version 1 (Collection)In the Standardized Genome Architecture (SEGA), genomic integration of DNA fragments is enabled by λ-Red recombineering and so-called landing pads that are a common concept in synthetic biology and typically contain features that i) enable insertion of additional genetic elements and ii) provide well-characterized functional parts such as promoters and genes, and iii) provides insulation against genome context-dependent effects. The SEGA landing pads allow for reusable homology regions and time-efficient construction of parallel genetic designs with a minimal number of reagents and handling steps. SEGA bricks, typically synthetic DNA or PCR fragments, are integrated on the genome simply by combining the two reagents (i.e. competent cells and DNA), followed by incubation steps, and successful recombinants are identified by visual inspection on agar plates. The design of the SEGA standard was heavily influenced by the Standard European Vector Architecture (SEVA). SEGA landing pads typically hosts two major genetic “control elements” that influence gene expression on the transcriptional (C1), and translational (C2) level. Furthermore, landing pads contain gadgets such as selection and counterselection markers.
BBa_K138002BBa_K138002 Version 1 (Component)Arabinose Landing Pad
BBa_K165084BBa_K165084 Version 1 (Component)pADH1 + Untagged LexA activator on pRS305
BBa_K165085BBa_K165085 Version 1 (Component)pADH1 + Untagged Zif268-HIV activator on pRS305
BBa_C100013BBa_C100013 Version 1 (Component)ORF of the PAD1 odorant enzyme
BBa_P100113BBa_P100113 Version 1 (Component)PAD1 ORF with RBS
BBa_P101113BBa_P101113 Version 1 (Component)PAD1 RBS.ORF.Term
BBa_P111113BBa_P111113 Version 1 (Component)PAD1 Expression Cassette (R0040)
BBa_P121113BBa_P121113 Version 1 (Component)PAD1 Expression Cassette (F2620)
BBa_P100213BBa_P100213 Version 1 (Component)PAD1 ORF with RBS (B0029)
BBa_K270002BBa_K270002 Version 1 (Component)Leucine Landing Pad
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.